HTMLWidget Wrapper of UpSet.js for Exploring Large Set Intersections • upsetjs

This is a HTMLWidget and Plot.ly Dash wrapper around the JavaScript library UpSet.js and an alternative implementation of UpSetR.

This package is part of the UpSet.js ecosystem located at the main Github Monorepo.

Installation

# CRAN version
install.packages('upsetjs')
# or
devtools::install_url("https://github.com/upsetjs/upsetjs_r/releases/latest/download/upsetjs.tar.gz")

library(upsetjs)

Example

listInput <- list(one = c(1, 2, 3, 5, 7, 8, 11, 12, 13), two = c(1, 2, 4, 5, 10), three = c(1, 5, 6, 7, 8, 9, 10, 12, 13))
upsetjs() %>% fromList(listInput) %>% interactiveChart()

List Input Example

Shiny Example

library(shiny)
library(upsetjs)

listInput <- list(one = c(1, 2, 3, 5, 7, 8, 11, 12, 13),
                  two = c(1, 2, 4, 5, 10),
                  three = c(1, 5, 6, 7, 8, 9, 10, 12, 13))

ui <- fluidPage(
  titlePanel("UpSet.js Shiny Example"),
  upsetjsOutput("upsetjs1"),
)

server <- function(input, output, session) {
  # render upsetjs as interactive plot
  output$upsetjs1 <- renderUpsetjs({
    upsetjs() %>% fromList(listInput) %>% interactiveChart()
  })
}

# Run the application
shinyApp(ui = ui, server = server)

shiny

Dash Example

library(dash)
library(dashHtmlComponents)
library(upsetjs)

app <- Dash$new()

app$layout(
    htmlDiv(
        list(
            htmlH1("Hello UpSet.js + Dash"),
            upsetjsDash(id = "upset") %>% fromList(list(a = c(1, 2, 3), b = c(2, 3)))
                %>% interactiveChart(),
            htmlDiv(id = "output")
        )
    )
)
app$callback(
    output = list(id = "output", property = "children"),
    params = list(input(id = "upset", property = "selection")),
    function(selection) {
        sprintf("You selected \"%s\"", selection$name)
    }
)

app$run_server()

TODO

Documentation

the package documentation is located at . An introduction vignette is at .

Venn Diagram

Besides the main UpSet.js plot also Venn Diagrams for up to five sets are supported. It uses the same input formats and has similar functionality in terms of interaction.

listInput <- list(one = c(1, 2, 3, 5, 7, 8, 11, 12, 13), two = c(1, 2, 4, 5, 10), three = c(1, 5, 6, 7, 8, 9, 10, 12, 13))
upsetjsVennDiagram() %>% fromList(listInput) %>% interactiveChart()

image

Karnaugh Maps Diagram

Besides the main UpSet.js plot also a variant of a Karnaugh Map is supported. It uses the same input formats and has similar functionality in terms of interaction.

listInput <- list(one = c(1, 2, 3, 5, 7, 8, 11, 12, 13), two = c(1, 2, 4, 5, 10), three = c(1, 5, 6, 7, 8, 9, 10, 12, 13))
upsetjsKarnaughMap() %>% fromList(listInput) %>% interactiveChart()

image

Dev Environment

requirements:

R with packages: devtools, pkgdown
pandoc

npm i -g yarn
yarn install
yarn sdks vscode

Building

yarn lint
yarn build

R Package

yarn style:r
yarn lint:r
yarn check:r
yarn build:r

or in R

devtools::load_all()
styler::style_pkg()
lintr::lint_pkg()
devtools::check()
devtools::document()
devtools::build()

R Package Website

will be automatically updated upon push

yarn docs:r

or in R

devtools::build_site()

Release

use release-it

yarn release
Rscript -e "devtools::release()"

Privacy Policy

UpSet.js is a client only library. The library or any of its integrations doesn’t track you or transfers your data to any server. The uploaded data in the app are stored in your browser only using IndexedDB. The Tableau extension can run in a sandbox environment prohibiting any server requests. However, as soon as you export your session within the app to an external service (e.g., Codepen.io) your data will be transferred.

License / Terms of Service

Commercial license

If you want to use UpSet.js for a commercial application or in a commercial environment, the commercial license is the appropriate license. Contact @sgratzl for details.

Open-source license

This library is released under the GNU AGPLv3 version to be used for private and academic purposes. In case of a commercial use, please get in touch regarding a commercial license.

UpSet.js as R HTMLWidget